![]() ![]() Finally, it models how to manually add struts – for ligands, ions, and other non-protein portions of your model (including DNA). Video 1B (YouTube) – This 17 min video demonstrates how to display sidechains (without a striped backbone), as well as using strut commands to automatically add struts within a protein.Video 1A (YouTube) – This is an 11 min video that demonstrates how to load a molecule in Jmol and how to display backbone and ligands using standard formats apropriate for building a model.Instructions on how to “morph” your protein (between two PDB files) using the Yale Morph Server.įor those of you who want to learn Jmol by looking over someone’s shoulder, check out these videos: Cover, Contents, and Acknowledgments (pdf)Ī double-sided Jmol Quick Reference Sheet that highlights key commands and useful resources for designing protein models in Jmol.The written Jmol Training Guide can also be downloaded as individual sections using the links below. Contacts (Identifying Ligand Interactions, Types of Interactions)Ī PDF version of the Jmol Training Guide that leads users through downloading Jmol, visualizing proteins using the command line and creating Jmol models to be built using 3D Printing Technology.Adding Animation to Jmol (Show Orientation, Delay, Flashing, Zshade, Spin).Adding Labels to an Image (Labels, Distances Between Atoms).Displaying Nucleic Acids (Display Formats, Coloring Schemes). ![]()
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